Basic Information
Locus ID:
Contig309.91
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig309 | 698442 | 705033 | - | Contig309.91 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 101,674.08 Da | 44.84 | 58.01 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12399 | RRM_HP0827_like | 739 | 814 | 2.49933E-29 | - |
| CDD | cd14136 | STKc_SRPK | 72 | 501 | 0.0 | - |
| Pfam | PF00098 | Zinc knuckle | 859 | 874 | 4.1E-7 | IPR001878 |
| Pfam | PF00069 | Protein kinase domain | 338 | 501 | 1.4E-20 | IPR000719 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 739 | 807 | 3.7E-20 | IPR000504 |
| Pfam | PF00069 | Protein kinase domain | 83 | 224 | 1.3E-19 | IPR000719 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 728 | 846 | 2.28E-32 | IPR035979 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 841 | 879 | 4.01E-8 | IPR036875 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 80 | 512 | 3.95E-83 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 59 | 165 | 1.9E-39 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 853 | 882 | 8.0E-7 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 721 | 852 | 4.8E-33 | IPR012677 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 166 | 502 | 1.1E-78 | - |
| SMART | SM00343 | c2hcfinal6 | 858 | 874 | 3.5E-6 | IPR001878 |
| SMART | SM00360 | rrm1_1 | 737 | 810 | 2.8E-28 | IPR000504 |
| SMART | SM00220 | serkin_6 | 83 | 501 | 7.6E-58 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 83 | 501 | 31.552048 | IPR000719 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 736 | 814 | 20.21821 | IPR000504 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 859 | 874 | 11.564723 | IPR001878 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 89 | 112 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 210 | 222 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 838 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 930 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 888 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 331 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53030.1 | ser/arg-rich protein kinase 4. Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31. | 5.55E-242 |
| RefSeq | XP_004981785.1 | SRSF protein kinase 1 [Setaria italica] | 0 |
| Q45FA5 | Serine/threonine-protein kinase SRPK OS=Physarum polycephalum OX=5791 PE=1 SV=1 | 4.61E-117 | |
| TrEMBL | K4A7P4 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101770816 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology