Basic Information
Locus ID:
Contig309.126
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig309 | 981502 | 983457 | + | Contig309.126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 25,028.24 Da | 43.22 | 65.41 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 25 | 224 | 3.9E-77 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 116 | 214 | 2.35E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 118 | 227 | 4.2E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 123 | 215 | 25.228346 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 69 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 8.8E-73 |
| RefSeq | XP_039828626.1 | auxin-responsive protein IAA13-like [Panicum virgatum] | 5.8E-154 |
| A2XLV9 | Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1 | 4.32E-108 | |
| TrEMBL | A0A3L6TJJ8 | Auxin-responsive protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G28560 PE=3 SV=1 | 1.31E-152 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology