Basic Information
Locus ID:
Contig309.108
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Pentacotripeptide-repeat region of PRORP
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig309 | 822400 | 824148 | - | Contig309.108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.45 | 64,860.17 Da | 45.46 | 78.97 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 377 | 404 | 0.051 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 480 | 510 | 0.067 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 293 | 351 | 3.5E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 407 | 456 | 1.6E-12 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 202 | 231 | 0.92 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 400 | 579 | 8.3E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 264 | 399 | 4.1E-37 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 134 | 263 | 2.0E-18 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 202 | 232 | 9.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 411 | 443 | 9.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 481 | 512 | 0.0023 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 305 | 339 | 2.9E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 377 | 408 | 9.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 271 | 304 | 4.4E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 340 | 374 | 1.0E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 268 | 302 | 12.561707 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 338 | 372 | 11.23539 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 373 | 407 | 10.851745 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 408 | 442 | 11.290196 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 303 | 337 | 12.41921 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 478 | 512 | 10.259834 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22670.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 1.62E-40 |
| RefSeq | XP_012704356.1 | pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Setaria italica] | 1.63E-172 |
| Q9LUJ4 | Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1 | 1.59E-39 | |
| TrEMBL | K4AMS1 | PPR_long domain-containing protein OS=Setaria italica OX=4555 GN=101753943 PE=4 SV=1 | 3.68E-171 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5752, jg9557 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3540, gene_5373 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g151540 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11218, Seu_jg15074 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002583 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35089, Sgl40474, Sgl73833, Sgl77335 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30228080, pistato.v30236350 |
| Apiaceae | Apium graveolens | 2 | Ag1G01844, Ag5G02278 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G001310, COCNU_03G001330, COCNU_04G007320 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718091, gene-LOC103718684 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G22017, Ftri9G15803 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G04130.1, AT3G22670.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g03100.v2.2, Sp3g20430.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1278 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1351 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g03570, gene.Cymno09g09580 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04160 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.712, evm.TU.LG11.999 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021764, Pov_00022238 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00954, Lb1G08048 |
| Poaceae | Echinochloa crus-galli | 4 | BH01.2664, BH01.761, CH01.757, Contig309.108 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0510080.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023481, gene-QYE76_061911 |
| Poaceae | Oryza coarctata | 3 | Oco03G014520, Oco04G014970, Oco06G024280 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g38950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G083600, gene-BS78_04G186700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G415700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG056230, gene_TRIDC5BG060280 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb057030_P001, Zm00001eb246390_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23463 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13832, Zma_g494 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2560, evm.TU.LG13.94 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15921, nbisL1-mrna-23199 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16773, nbisL1-mrna-9301 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14672, nbisL1-mrna-649 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006512 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19530, nbisL1-mrna-22921 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15954, nbisL1-mrna-3499 |
| Salicaceae | Populus euphratica | 5 | populus_peu07647, populus_peu21418, populus_peu21419 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609668, gene-LOC132641233 |
| Solanaceae | Solanum chilense | 2 | SOLCI004820900, SOLCI007024500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020744, gene-LOC107031368 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19726_chr07_+, gene_15533 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0518, TC09G0412 |
| Zosteraceae | Zostera marina | 3 | Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1 |