Basic Information
Locus ID:
Contig1882.1
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig1882 | 18419 | 22432 | - | Contig1882.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 100,367.60 Da | 49.53 | 79.86 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 643 | 901 | 2.93952E-102 | - |
| CDD | cd06410 | PB1_UP2 | 14 | 109 | 1.10175E-46 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 639 | 901 | 1.9E-56 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 27 | 110 | 1.4E-19 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 625 | 900 | 1.52E-69 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 26 | 116 | 4.25E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 725 | 914 | 5.3E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 630 | 724 | 2.0E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 29 | 112 | 1.2E-13 | - |
| SMART | SM00666 | PB1_new | 25 | 112 | 6.3E-30 | IPR000270 |
| SMART | SM00220 | serkin_6 | 637 | 907 | 3.4E-45 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 637 | 908 | 37.940617 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 643 | 664 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 762 | 774 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 872 | 894 | 6.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 828 | 850 | 6.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 719 | 732 | 6.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 756 | 774 | 6.5E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 192 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04700.1 | PB1 domain-containing protein tyrosine kinase. | 2.93E-179 |
| RefSeq | XP_039840042.1 | uncharacterized protein LOC120699983 [Panicum virgatum] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 1.72E-153 | |
| TrEMBL | A0A3L6RBQ7 | Protein kinase domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G32720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology