Basic Information
Locus ID:
Chr31G008570
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000031 | 32023850 | 32031406 | + | Chr31G008570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 26 | 53 | 0.00271896 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 793 | 922 | 3.63948E-61 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 598 | 768 | 1.7E-47 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 805 | 913 | 7.0E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 646 | 929 | 2.76E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 19 | 54 | 4.65E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 785 | 955 | 4.6E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 552 | 784 | 1.0E-86 | IPR027417 |
| SMART | SM00487 | ultradead3 | 593 | 796 | 5.1E-66 | IPR014001 |
| SMART | SM00456 | ww_5 | 24 | 55 | 3.5E-4 | IPR001202 |
| SMART | SM00490 | helicmild6 | 833 | 913 | 1.5E-32 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 574 | 602 | 11.016736 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 23 | 55 | 11.152 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 605 | 779 | 31.138042 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 808 | 952 | 25.302727 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 725 | 733 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 29 | 53 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1145 | 1218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1230 | 1246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 232 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_004980011.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X2 [Setaria italica] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UJ05 | DEAD-box ATP-dependent RNA helicase 40 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25823 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology