halophFGD

Basic Information

Locus ID: Chr31G008340

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Short Name: UBI3

Description: ubiquitin-40S ribosomal protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000031	31780852	31781474	-	Chr31G008340

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	3	56	1.2E-18	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	1	54	1.24E-18	IPR029071
Gene3D	G3DSA:3.10.20.90	-	55	80	2.2E-6	-
Gene3D	G3DSA:3.10.20.90	-	1	51	1.8E-28	-
SMART	SM00213	ubq_7	1	68	2.6E-15	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	1	57	18.671614	IPR000626
PRINTS	PR00348	Ubiquitin signature	32	52	1.9E-20	IPR019956
PRINTS	PR00348	Ubiquitin signature	11	31	1.9E-20	IPR019956
MobiDBLite	mobidb-lite	consensus disorder prediction	77	100	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	68	100	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K02977 (ubiquitin-small subunit ribosomal protein S27Ae)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G36170.1	Ubiquitin supergroup;Ribosomal protein L40e.
RefSeq	XP_020151110.1	ubiquitin-like [Aegilops tauschii subsp. strangulata]
Swiss-Prot	P69310	Ubiquitin OS=Avena sativa OX=4498 PE=1 SV=1
TrEMBL	A0A059DDH9	Ubiquitin-like domain-containing protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01161 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for Chr31G008340.