Basic Information
Locus ID:
Chr31G007510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000031 | 30522899 | 30527726 | + | Chr31G007510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 272 | 346 | 2.43593E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 154 | 228 | 6.22962E-47 | - |
| CDD | cd12352 | RRM1_TIA1_like | 70 | 140 | 2.19969E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 70 | 136 | 7.9E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 155 | 225 | 1.2E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 274 | 340 | 5.2E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 264 | 352 | 1.76E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 67 | 231 | 3.53E-46 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 150 | 1.4E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 253 | 351 | 8.1E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 151 | 252 | 3.6E-26 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 154 | 227 | 0.25 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 273 | 342 | 5.6E-19 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 154 | 227 | 2.0E-24 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 273 | 342 | 1.6 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 69 | 138 | 3.6E-18 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 68 | 142 | 15.749695 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 272 | 346 | 16.721853 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 153 | 231 | 18.137451 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 269 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | NP_001150056.2 | Oligouridylate-binding protein 1B [Zea mays] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UKX4 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology