Basic Information
Locus ID:
Chr31G006770
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000031 | 29150491 | 29152521 | + | Chr31G006770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 138 | 186 | 3.5E-4 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 409 | 649 | 2.5E-29 | IPR000719 |
| Pfam | PF01476 | LysM domain | 213 | 251 | 0.015 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 354 | 651 | 2.31E-53 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 136 | 186 | 2.2E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 448 | 665 | 5.4E-42 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 358 | 445 | 7.0E-13 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 136 | 185 | 11.04533 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 205 | 250 | 9.146161 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 378 | 652 | 28.583908 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_039824976.1 | lysM domain receptor-like kinase 4 [Panicum virgatum] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6Q285 | LysM domain receptor-like kinase 4 OS=Panicum miliaceum OX=4540 GN=C2845_PM17G11510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology