Basic Information
Locus ID:
Chr31G005940
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000031 | 26763622 | 26786351 | + | Chr31G005940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 318 | 4.32005E-158 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 954 | 1050 | 1.8E-11 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 360 | 436 | 1.2E-13 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 353 | 6.6E-85 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 642 | 855 | 2.4E-41 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 357 | 4.89E-96 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 358 | 435 | 2.98E-20 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 527 | 1053 | 2.98E-122 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1360 | - | 940 | 1057 | 1.4E-25 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 533 | 640 | 2.1E-22 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 641 | 920 | 1.8E-88 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 323 | 395 | 2.4E-25 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 396 | 451 | 4.1E-17 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 322 | 1.4E-110 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 359 | 429 | 2.0E-14 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_034568306.1 | probable alpha-mannosidase At5g13980 isoform X1 [Setaria viridis] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A8ZMK7 | Alpha-mannosidase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology