Basic Information
Locus ID:
Chr31G005910
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000031 | 26692253 | 26705428 | + | Chr31G005910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 317 | 5.43544E-176 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1007 | 3.0E-13 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 353 | 2.6E-92 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 605 | 819 | 8.3E-42 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 450 | 1.4E-21 | IPR015341 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 358 | 458 | 2.39E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1010 | 1.02E-137 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 356 | 2.33E-107 | IPR011330 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 400 | 457 | 2.8E-22 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 867 | 4.5E-93 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1014 | 2.9E-35 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 478 | 603 | 2.0E-27 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 399 | 4.1E-30 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 321 | 4.0E-118 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 3.8E-22 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_034568306.1 | probable alpha-mannosidase At5g13980 isoform X1 [Setaria viridis] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6TFC2 | Alpha-mannosidase OS=Setaria viridis OX=4556 GN=SEVIR_8G146100v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology