Basic Information
Locus ID:
Chr31G003890
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000031 | 9971970 | 9972823 | + | Chr31G003890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 24 | 77 | 7.7E-13 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 24 | 87 | 2.95E-16 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 23 | 85 | 1.1E-15 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 90 | 13.276787 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20930.1 | cyclin-dependent kinase B2;2. Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle. | 0 |
| RefSeq | XP_042400254.1 | cell division control protein 2 homolog D-like [Zingiber officinale] | 0 |
| Q38775 | Cell division control protein 2 homolog D OS=Antirrhinum majus OX=4151 GN=CDC2D PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5CDA5 | Protein kinase domain-containing protein OS=Zingiber officinale OX=94328 GN=ZIOFF_068180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G013640, Chr16G011030, Chr31G003890 |
| Poaceae | Zea mays | 5 | Zm00001eb036420_P001, Zm00001eb051670_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26271 |