Basic Information
Locus ID:
Chr31G002050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000031 | 2870176 | 2874375 | + | Chr31G002050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 438 | 1.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 542 | 579 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 506 | 537 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 679 | 714 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 400 | 717 | 2.14E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 498 | 720 | 6.7E-46 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 341 | 494 | 6.8E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 674 | 715 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 439 | 3.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 537 | 7.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 540 | 579 | 7.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 620 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 633 | 673 | 4.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 407 | 440 | 12.235586 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 506 | 546 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 506 | 541 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 407 | 448 | 15.220417 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 546 | 580 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 546 | 580 | 10.495596 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 524 | 538 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 524 | 538 | 3.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 566 | 580 | 3.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 426 | 440 | 3.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 983 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 1003 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 51 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025828580.1 | uncharacterized protein LOC112903529 [Panicum hallii] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SUJ1 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51839 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology