Basic Information
Locus ID:
Chr30G014610
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 32023333 | 32026702 | + | Chr30G014610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 231 | 280 | 6.48602E-14 | - |
| Pfam | PF12906 | RING-variant domain | 231 | 279 | 2.0E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 227 | 283 | 9.08E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 217 | 287 | 6.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 230 | 280 | 3.0E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 223 | 286 | 19.292761 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 79 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039819875.1 | uncharacterized protein LOC120682167 isoform X7 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9T613 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_46879 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology