Basic Information
Locus ID:
Chr30G009550
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 11305979 | 11317219 | + | Chr30G009550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 7.65172E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 282 | 329 | 8.3E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 203 | 265 | 6.8E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 272 | 1.65E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 332 | 8.48E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 215 | 5.42E-16 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 558 | 584 | 4.39E-5 | IPR036443 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 217 | 2.2E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 261 | 516 | 1.3E-86 | - |
| SMART | SM00547 | zf_4 | 560 | 584 | 0.0011 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 203 | 265 | 1.4E-22 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 278 | 339 | 0.046 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 343 | 49.807205 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 562 | 581 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_039821096.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum virgatum] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0Q3A7 | RBR-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_7NG219700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology