Basic Information
Locus ID:
Chr30G006610
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 7323685 | 7328826 | - | Chr30G006610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 592 | 630 | 0.053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 452 | 3.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 344 | 2.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 459 | 495 | 4.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 309 | 770 | 2.17E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 299 | 663 | 1.3E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 498 | 536 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 630 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 495 | 2.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 588 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 415 | 453 | 3.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 3.3E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 346 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 422 | 456 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 504 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 462 | 498 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 422 | 462 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 346 | 13.750016 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 332 | 346 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 482 | 496 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 440 | 454 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 332 | 346 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 143 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039819413.1 | WD repeat-containing protein 44-like [Panicum virgatum] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7CXU4 | WD_REPEATS_REGION domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G221500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology