Basic Information
Locus ID:
Chr30G006600
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 7312340 | 7321399 | - | Chr30G006600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 711 | 771 | 1.3E-6 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 252 | 361 | 3.8E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 833 | 905 | 6.12E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 387 | 2.14E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 710 | 772 | 1.32E-11 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 396 | 3.1E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 710 | 789 | 1.5E-8 | - |
| SMART | SM00358 | DRBM_3 | 708 | 772 | 4.7E-7 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 833 | 899 | 0.015 | IPR014720 |
| SMART | SM00577 | forpap2 | 193 | 370 | 4.2E-12 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 386 | 17.2771 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 736 | 773 | 11.212814 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 832 | 900 | 10.12038 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 948 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 556 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_039774792.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Panicum virgatum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TUM5 | protein-serine/threonine phosphatase OS=Eragrostis curvula OX=38414 GN=EJB05_38612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology