Basic Information
Locus ID:
Chr30G004830
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 4432673 | 4433327 | - | Chr30G004830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 147 | 191 | 6.78679E-19 | - |
| Pfam | PF13639 | Ring finger domain | 147 | 191 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 197 | 1.01E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 199 | 6.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 147 | 190 | 3.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 191 | 11.058237 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60220.1 | TOXICOS EN LEVADURA 4. Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4). | 0 |
| RefSeq | XP_021317076.1 | RING-H2 finger protein ATL74 [Sorghum bicolor] | 0 |
| P0DPR2 | E3 ubiquitin-protein ligase RNF43 OS=Xenopus tropicalis OX=8364 GN=rnf43 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UT26 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_29496 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G021370, Chr30G004830 |