Basic Information
Locus ID:
Chr30G004690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
BRH1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 4263880 | 4264668 | + | Chr30G004690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 107 | 150 | 5.5073E-14 | - |
| Pfam | PF13639 | Ring finger domain | 106 | 150 | 3.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 156 | 1.51E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 156 | 2.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 107 | 149 | 3.3E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 106 | 150 | 0.003 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 107 | 150 | 11.869652 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_034602045.1 | E3 ubiquitin-protein ligase RHA1B-like [Setaria viridis] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6PST8 | E3 ubiquitin-protein ligase RHA1B-like OS=Panicum miliaceum OX=4540 GN=C2845_PM16G17490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology