Basic Information
Locus ID:
Chr30G004660
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 4228563 | 4229870 | + | Chr30G004660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025880398.1 | SUMO-conjugating enzyme SCE1 isoform X1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A0P0WDW4 | Os04g0580400 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0580400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11603, jg19671, jg30672, jg40006 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16697, gene_16698 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027413 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127260 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13066, Sbi_jg52820 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9061 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010194 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33907, Sgl39274 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002668, gene:ENSEOMG00000028518 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025330, CQ.Regalona.r1.6BG0026860 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30044920, pistato.v30205830 |
| Apiaceae | Apium graveolens | 2 | Ag4G01110, Ag5G00297 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G019900, COCNU_07G007810, contig69644838G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702696, gene-LOC103719655, gene-LOC103720898 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2993.V1.1, AsparagusV1_04.2413.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G12998, Ftri18G29250 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G57870.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006281m.g.v1.0, Thhalv10006282m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g01130.v2.2, Sp5g04850.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g055450.2N, BniB06g061590.2N, BniB06g063740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1342 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1348 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g03530 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0218s00011.v1.0, Dusal.0783s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10050, nbisL1-mrna-1239, nbisL1-mrna-6644 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.400, evm.TU.LG06.401 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00023884, Pov_00029182, Pov_00038191 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G06301, Lb1G06302, Lb3G20814, Lb8G36075, Lb8G36081 |
| Poaceae | Echinochloa crus-galli | 13 | AH01.3087, AH01.5124, AH09.2036, AH09.2037, BH01.3429 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0114990, gene-QOZ80_2BG0168770 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0054200.1, HORVU.MOREX.r3.2HG0186230.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007902, gene-QYE76_012240, gene-QYE76_045735 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G001350, Oco06G001310, Oco07G013910, Oco17G000630 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g03130.1, LOC_Os04g49130.1, LOC_Os10g39120.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G302700, gene-BS78_01G500500 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0100580, Pt_Chr0100625, Pt_Chr0703598, Pt_Chr0703599 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr04G005940, Chr06G028780, Chr07G005670, Chr09G003630 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G344400, Tel2E01G678200, Tel4E01G568500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG030250, gene_TRIDC1BG035760 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G199500.1, TraesCS1B02G214400.2 ... |
| Poaceae | Zea mays | 6 | Zm00001eb001680_P001, Zm00001eb022000_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-22645, nbis-gene-3102, nbis-gene-36175 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g12809, Zma_g15591, Zma_g20294, Zma_g2202, Zma_g4549 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.1038, evm.TU.LG05.1586, evm.TU.LG05.543 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04540 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60424.19, evm.TU.Scaffold_3_RagTag.147 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-17292, nbisL1-mrna-19195, nbisL1-mrna-630 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14113, nbisL1-mrna-8427 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11926, nbisL1-mrna-6096 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1130, evm.TU.utg000019l.1016 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008160, Maker00012628 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15487, nbisL1-mrna-6418 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2210, nbisL1-mrna-3242 |
| Salicaceae | Populus euphratica | 2 | populus_peu14416, populus_peu32008 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132604084, gene-LOC132604085, gene-LOC132617189 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI000913500, SOLCI001699600, SOLCI001781100 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107007623, gene-LOC107011237, gene-LOC107012122 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.2835_chr03_+, STRG.6486_chr03_-, gene_1749 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1767, TC04G2563 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12070.v3.1 |