Basic Information
Locus ID:
Chr30G003820
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 3319841 | 3321033 | + | Chr30G003820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 39 | 1.5E-9 | IPR001810 |
| Pfam | PF00646 | F-box domain | 149 | 181 | 2.2E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 146 | 199 | 6.67E-12 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 57 | 4.97E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 44 | 2.2E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 135 | 186 | 5.1E-9 | - |
| SMART | SM00256 | fbox_2 | 150 | 190 | 1.3E-6 | IPR001810 |
| SMART | SM00256 | fbox_2 | 8 | 48 | 1.3E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 49 | 9.153042 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 144 | 191 | 10.451268 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | A0A5J9WAV3 | Brix domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_04958 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.909, CH01.1086 |
| Poaceae | Oryza coarctata | 1 | Oco05G021200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49690.1 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr0G019060, Chr0G019110, Chr0G019180, Chr0G020660 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G278500 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G119500.1, TraesCS6B02G147800.1.cds1 |