Basic Information
Locus ID:
Chr30G001520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 1133970 | 1135451 | + | Chr30G001520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 183 | 304 | 1.09425E-13 | IPR002083 |
| CDD | cd00121 | MATH | 24 | 127 | 1.21221E-8 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 338 | 438 | 2.2E-13 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 333 | 439 | 6.28E-16 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 19 | 130 | 1.34E-14 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 179 | 270 | 4.91E-13 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 181 | 308 | 5.6E-9 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 23 | 130 | 1.2E-9 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 329 | 470 | 1.0E-27 | IPR011333 |
| SMART | SM00225 | BTB_4 | 344 | 441 | 3.2E-10 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 20 | 126 | 8.73125 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 344 | 401 | 10.095861 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 174 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034585246.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria viridis] | 0 |
| A0JMG1 | Speckle-type POZ protein-like B OS=Danio rerio OX=7955 GN=spoplb PE=2 SV=2 | 0 | |
| TrEMBL | K3ZEL5 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=101785763 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300850, gene-QOZ80_4BG0331560 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001920, Chr25G001520, Chr30G001520 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23089 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20606 |