Basic Information
Locus ID:
Chr30G000690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 555241 | 567723 | + | Chr30G000690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 32 | 284 | 1.82886E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 192 | 1.2E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 32 | 65 | 0.045 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 114 | 150 | 3.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 234 | 6.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 73 | 108 | 1.2E-5 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 771 | 927 | 1.9E-50 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 32 | 317 | 6.18E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 164 | 4.2E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 165 | 312 | 3.8E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 195 | 234 | 3.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 275 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 69 | 108 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 192 | 3.4E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 26 | 66 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 150 | 3.6E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 159 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 243 | 16.089291 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 33 | 65 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 160 | 201 | 18.729328 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 33 | 75 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 76 | 117 | 16.256382 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 202 | 237 | 12.789221 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 118 | 152 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 160 | 197 | 14.476484 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 76 | 110 | 12.103769 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 221 | 235 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 179 | 193 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 95 | 109 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 179 | 193 | 7.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 221 | 235 | 7.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 137 | 151 | 7.8E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 22 | 932 | 20.493458 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 760 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039774457.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3-like [Panicum virgatum] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U0U6 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Eragrostis curvula OX=38414 GN=EJB05_40174 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology