Basic Information
Locus ID:
Chr30G000670
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000030 | 537955 | 542063 | - | Chr30G000670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 404 | 440 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 482 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 579 | 616 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 317 | 6.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 279 | 620 | 3.21E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 242 | 336 | 1.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 391 | 667 | 3.1E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 713 | 757 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 318 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 482 | 2.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 575 | 70.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 617 | 0.052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 440 | 2.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 523 | 7.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 409 | 449 | 14.451798 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 449 | 484 | 10.469233 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 286 | 323 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 286 | 327 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 484 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 409 | 443 | 10.891048 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 305 | 319 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 427 | 441 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 305 | 319 | 1.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 469 | 483 | 1.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 427 | 441 | 1.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 199 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004960064.1 | WD repeat-containing protein 44 [Setaria italica] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TYX5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_40185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology