Basic Information
Locus ID:
Chr29G012990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 37200514 | 37204194 | + | Chr29G012990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 39 | 173 | 7.1358E-46 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 249 | 292 | 1.62316E-22 | - |
| Pfam | PF02225 | PA domain | 80 | 158 | 2.9E-10 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 249 | 292 | 4.6E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 97 | 159 | 9.68E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 304 | 2.01E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 211 | 297 | 7.9E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 40 | 170 | 5.6E-27 | - |
| SMART | SM00184 | ring_2 | 250 | 291 | 1.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 250 | 292 | 12.415513 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_022683214.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X1 [Setaria italica] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9DHP4 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology