Basic Information
Locus ID:
Chr29G012860
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 37062139 | 37063191 | + | Chr29G012860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 83 | 232 | 6.28E-20 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 75 | 274 | 4.9E-20 | - |
| ProSiteProfiles | PS50835 | Ig-like domain profile. | 182 | 309 | 6.578307 | IPR007110 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 78 | 309 | 14.110356 | IPR028889 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_039847200.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Panicum virgatum] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0A8Y5E7 | USP domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology