Basic Information
Locus ID:
Chr29G012850
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein NRT1 PTR FAMILY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 37055718 | 37059480 | + | Chr29G012850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 252 | 800 | 3.7E-41 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 202 | 1.41E-7 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 250 | 802 | 1.51E-69 | IPR038765 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 215 | 2.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 498 | 803 | 1.6E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 234 | 436 | 7.5E-29 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 125 | 203 | 12.531981 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 251 | 803 | 38.086208 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 252 | 267 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 734 | 752 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_052164869.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Oryza glaberrima] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0IEW6 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology