Basic Information
Locus ID:
Chr29G012160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 36267250 | 36273064 | - | Chr29G012160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 555 | 3.05361E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 555 | 5.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 385 | 0.0063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 512 | 0.0085 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 297 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 343 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 257 | 555 | 1.79E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 252 | 521 | 1.3E-62 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 578 | 6.1E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 471 | 513 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 6.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 467 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 2.0E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 2.8E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 300 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 348 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 565 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 499 | 522 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 558 | 11.5765 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 101 | 150 | 8.423283 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.646169 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 285 | 299 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 500 | 514 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 285 | 299 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 543 | 557 | 5.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_004972947.1 | WD repeat-containing protein 26 isoform X2 [Setaria italica] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | K3YGT1 | WD repeat-containing protein 26 OS=Setaria italica OX=4555 GN=101758974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology