Basic Information
Locus ID:
Chr29G010600
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 33406335 | 33422929 | - | Chr29G010600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 294 | 646 | 8.28957E-69 | - |
| CDD | cd18793 | SF2_C_SNF | 885 | 990 | 9.73097E-49 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 307 | 723 | 1.6E-67 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 762 | 798 | 2.0E-4 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 877 | 980 | 3.1E-14 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 757 | 806 | 4.91E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 654 | 1037 | 1.36E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 279 | 646 | 1.2E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 416 | 507 | 2.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 532 | 647 | 1.8E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 263 | 354 | 2.8E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 661 | 1038 | 6.8E-63 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 752 | 812 | 8.8E-11 | IPR013083 |
| SMART | SM00490 | helicmild6 | 897 | 980 | 2.4E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 290 | 616 | 1.5E-29 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 438 | 608 | 12.709673 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 869 | 1033 | 13.387023 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 762 | 801 | 10.895954 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 777 | 786 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 538 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_025800037.1 | helicase-like transcription factor CHR28 isoform X1 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W4K6 | Helicase-like transcription factor CHR28 OS=Eragrostis curvula OX=38414 GN=EJB05_09494 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology