Basic Information
Locus ID:
Chr29G010510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 33170289 | 33174822 | + | Chr29G010510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 13 | 60 | 7.1E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 6 | 60 | 2.76E-15 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 4 | 62 | 1.4E-17 | - |
| SMART | SM00213 | ubq_7 | 1 | 60 | 2.2E-7 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 11 | 57 | 13.793925 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 20 | 40 | 3.5E-14 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 41 | 62 | 3.5E-14 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_051194218.1 | ubiquitin-NEDD8-like protein RUB2 [Lolium perenne] | 0 |
| P69310 | Ubiquitin OS=Avena sativa OX=4498 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PSP1 | Ubiquitin-like domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS31158 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 3 | Oco15G003440, Oco16G003390, Oco16G003400 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g08340.1, LOC_Os08g08420.1, LOC_Os08g08430.1 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr20G012150, Chr20G012180, Chr29G010510, Chr29G010530 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-38939, nbis-gene-38941, nbis-gene-38942 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g22579, Zma_g22580, Zma_g22582, Zma_g22583 |