Basic Information
Locus ID:
Chr29G009620
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 31038099 | 31039310 | + | Chr29G009620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 21 | 96 | 4.65905E-9 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 168 | 258 | 3.3E-17 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 18 | 105 | 1.31E-14 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 167 | 258 | 1.22E-16 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 261 | 328 | 1.8E-14 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 20 | 130 | 3.1E-10 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 165 | 260 | 1.7E-21 | IPR011333 |
| SMART | SM00225 | BTB_4 | 151 | 259 | 2.4E-9 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 168 | 215 | 9.971769 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_044968778.1 | BTB/POZ and MATH domain-containing protein 2-like [Hordeum vulgare subsp. vulgare] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6WUA9 | Speckle-type POZ protein-like protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8AG0622620, gene-QOZ80_8AG0622680 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021820, Chr20G009970, Chr20G009980, Chr29G009620 |