Basic Information
Locus ID:
Chr29G007730
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 18122947 | 18141483 | - | Chr29G007730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 31 | 308 | 5.44881E-174 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 890 | 995 | 3.4E-9 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 349 | 440 | 1.3E-16 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 596 | 808 | 1.8E-55 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 32 | 344 | 2.7E-93 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 346 | 2.13E-109 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 348 | 443 | 1.44E-25 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 450 | 998 | 6.91E-146 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 392 | 447 | 3.5E-19 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 313 | 391 | 1.2E-30 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 31 | 312 | 9.4E-117 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 457 | 568 | 6.7E-25 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 590 | 856 | 3.7E-103 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 879 | 998 | 1.2E-30 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 349 | 423 | 1.5E-19 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_002464752.1 | alpha-mannosidase [Sorghum bicolor] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V736 | Alpha-mannosidase OS=Eragrostis curvula OX=38414 GN=EJB05_23016 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology