Basic Information
Locus ID:
Chr29G007510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 16257221 | 16262938 | + | Chr29G007510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 27 | 332 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 41 | 330 | 4.2E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 22 | 378 | 5.28E-122 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 14 | 384 | 5.1E-132 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 385 | 2.1E-192 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 76 | 94 | 1.1E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 128 | 148 | 1.1E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 228 | 241 | 1.1E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 169 | 185 | 1.1E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 245 | 263 | 1.1E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 43 | 60 | 1.1E-59 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 267 | 277 | 1.1E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 182 | 197 | 1.1E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 124 | 1.1E-59 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 150 | 173 | 1.1E-24 | IPR000286 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_002444249.1 | histone deacetylase 6 [Sorghum bicolor] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T566 | Histone deacetylase OS=Eragrostis curvula OX=38414 GN=EJB05_49737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology