Basic Information
Locus ID:
Chr29G003780
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 4383082 | 4394885 | + | Chr29G003780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 446 | 748 | 9.86743E-130 | - |
| Pfam | PF01753 | MYND finger | 115 | 152 | 7.6E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 445 | 747 | 5.5E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 441 | 752 | 1.12E-83 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 112 | 155 | 4.36E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 438 | 762 | 2.9E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 103 | 156 | 4.0E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 115 | 152 | 11.602668 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 445 | 750 | 52.491745 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 115 | 152 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 446 | 461 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 899 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 106 | - | - |
| Coils | Coil | Coil | 37 | 57 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_004973704.1 | ubiquitin carboxyl-terminal hydrolase 16 [Setaria italica] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T2E2 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Eragrostis curvula OX=38414 GN=EJB05_48675 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology