Basic Information
Locus ID:
Chr29G002120
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 2000619 | 2010715 | - | Chr29G002120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 282 | 356 | 3.63732E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 159 | 233 | 2.61676E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 284 | 350 | 1.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 75 | 141 | 9.6E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 230 | 8.2E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 270 | 360 | 2.85E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 72 | 238 | 1.97E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 257 | 361 | 7.4E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 156 | 255 | 1.0E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 155 | 5.8E-25 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 159 | 232 | 0.37 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 283 | 352 | 2.8 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 74 | 143 | 1.1E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 159 | 232 | 1.0E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 283 | 352 | 3.9E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 282 | 356 | 16.210192 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 147 | 15.220978 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 236 | 16.84124 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 279 | - | - |
| Coils | Coil | Coil | 15 | 38 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_025820398.1 | oligouridylate-binding protein 1B-like [Panicum hallii] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835AB47 | Oligouridylate-binding protein 1B-like OS=Digitaria exilis OX=1010633 GN=HU200_061832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology