Basic Information
Locus ID:
Chr29G001740
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 1594146 | 1598200 | + | Chr29G001740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 153 | 210 | 2.5E-6 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 24 | 81 | 3.7E-7 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 259 | 764 | 7.0E-43 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 257 | 766 | 5.69E-66 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 210 | 1.41E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 82 | 4.24E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 252 | 533 | 8.0E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 93 | 3.1E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 214 | 6.1E-8 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 534 | 771 | 4.5E-33 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 258 | 767 | 37.986069 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 12 | 82 | 13.248064 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 140 | 211 | 12.828484 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 259 | 274 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 697 | 716 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 601 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034600573.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Setaria viridis] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9T0R0 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology