Basic Information
Locus ID:
Chr29G001060
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
CPK24
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000029 | 981967 | 983771 | + | Chr29G001060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 339 | 397 | 4.60196E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 412 | 465 | 1.6E-7 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 57 | 242 | 2.1E-33 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 342 | 398 | 1.1E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 321 | 483 | 3.5E-37 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 300 | 1.08E-53 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 58 | 153 | 3.3E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 166 | 241 | 1.1E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 242 | 302 | 8.9E-11 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 303 | 467 | 1.2E-44 | - |
| SMART | SM00054 | efh_1 | 441 | 467 | 1.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 339 | 367 | 0.045 | IPR002048 |
| SMART | SM00054 | efh_1 | 411 | 439 | 0.0021 | IPR002048 |
| SMART | SM00220 | serkin_6 | 57 | 292 | 1.8E-47 | IPR000719 |
| SMART | SM00054 | efh_1 | 375 | 403 | 2.1 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 57 | 292 | 29.573288 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 335 | 370 | 14.48551 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 443 | 470 | 9.464338 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 407 | 442 | 14.039183 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 448 | 460 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 348 | 360 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 420 | 432 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 384 | 396 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 179 | 191 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 63 | 86 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_008679475.1 | calcium-dependent protein kinase 21 isoform X1 [Zea mays] | 0 |
| Q6ZIU9 | Calcium-dependent protein kinase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T0J5 | Calcium-dependent protein kinase 30 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_47943 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.2242, BH08.2372, CH08.2548 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638190, gene-QOZ80_8BG0667730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0686030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030419, gene-QYE76_061945 |
| Poaceae | Oryza coarctata | 2 | Oco15G013700, Oco16G012880 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G210600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403526 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G002420, Chr29G001060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G466300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG034960, gene_TRIDC7BG026070 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G267000.1, TraesCS7B02G165200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198360_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24464 |