halophFGD

Basic Information

Locus ID: Chr29G000590

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Rhamnogalacturonate lyase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000029	497335	508605	-	Chr29G000590

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10317	RGL4_C	465	653	5.16204E-57	-
CDD	cd10316	RGL4_M	354	453	5.67601E-33	IPR029413
CDD	cd10320	RGL4_N	28	315	9.61513E-76	-
Pfam	PF14683	Polysaccharide lyase family 4, domain III	463	652	6.6E-53	IPR029411
Pfam	PF14686	Polysaccharide lyase family 4, domain II	377	448	5.5E-23	IPR029413
Pfam	PF06045	Rhamnogalacturonate lyase family	16	223	3.0E-93	IPR010325
SUPERFAMILY	SSF49452	Starch-binding domain-like	375	448	9.02E-8	IPR013784
SUPERFAMILY	SSF74650	Galactose mutarotase-like	39	314	3.77E-8	IPR011013
SUPERFAMILY	SSF49785	Galactose-binding domain-like	460	653	2.98E-47	IPR008979
Gene3D	G3DSA:2.60.120.260	-	461	653	2.4E-14	-
Gene3D	G3DSA:2.70.98.10	-	27	331	1.1E-6	IPR014718
Gene3D	G3DSA:2.60.40.1120	-	351	449	1.6E-5	-

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K18195 (rhamnogalacturonan endolyase [EC:4.2.2.23])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09890.4	-
RefSeq	XP_002445711.1	probable rhamnogalacturonate lyase B [Sorghum bicolor]
TrEMBL	C5YNB6	rhamnogalacturonan endolyase OS=Sorghum bicolor OX=4558 GN=SORBI_3007G173300 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	13	jg17084, jg17085, jg17086, jg17087, jg20026, jg22654, jg6148 ... jg22655, jg31052, jg39575, jg39576, jg39578, jg39579
Aizoaceae	Mesembryanthemum crystallinum	8	gene_1155, gene_1172, gene_1173, gene_1174, gene_16432 ... gene_16434, gene_16544, gene_23028
Amaranthaceae	Atriplex hortensis	8	Ah003916, Ah012884, Ah012890, Ah023583, Ah023584, Ah023585 ... Ah023586, Ah023590
Amaranthaceae	Beta vulgaris	6	BVRB_1g005340, BVRB_1g005360, BVRB_1g005370, BVRB_1g005420 ... BVRB_6g152770, BVRB_6g152780
Amaranthaceae	Salicornia bigelovii	13	Sbi_jg28933, Sbi_jg28936, Sbi_jg28938, Sbi_jg28941 ... Sbi_jg28954, Sbi_jg2985, Sbi_jg2993, Sbi_jg2996, Sbi_jg2998, Sbi_jg2999, Sbi_jg42349, Sbi_jg42352, Sbi_jg44932
Amaranthaceae	Salicornia europaea	7	Seu_jg27199, Seu_jg27201, Seu_jg6887, Seu_jg6888, Seu_jg6890 ... Seu_jg6891, Seu_jg6897
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000935, GOSA_00000936, GOSA_00000937, GOSA_00000945 ... GOSA_00002327, GOSA_00002328
Amaranthaceae	Suaeda glauca	12	Sgl11835, Sgl11839, Sgl11840, Sgl11842, Sgl15932, Sgl15936 ... Sgl15937, Sgl15939, Sgl31910, Sgl31911, Sgl37188, Sgl37189
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000001165, gene:ENSEOMG00000013789 ... gene:ENSEOMG00000014412, gene:ENSEOMG00000015320, gene:ENSEOMG00000024504, gene:ENSEOMG00000035050, gene:ENSEOMG00000035291, gene:ENSEOMG00000035674, gene:ENSEOMG00000047761
Amaranthaceae	Chenopodium quinoa	11	CQ.Regalona.r1.1AG0009720, CQ.Regalona.r1.1AG0009730 ... CQ.Regalona.r1.1AG0009770, CQ.Regalona.r1.1BG0015990, CQ.Regalona.r1.1BG0016030, CQ.Regalona.r1.1BG0016040, CQ.Regalona.r1.6AG0007710, CQ.Regalona.r1.6AG0007720, CQ.Regalona.r1.6BG0008460, CQ.Regalona.r1.6BG0008480, CQ.Regalona.r1.6BG0008490
Anacardiaceae	Pistacia vera	5	pistato.v30042220, pistato.v30042230, pistato.v30042240 ... pistato.v30042260, pistato.v30204100
Apiaceae	Apium graveolens	7	Ag10G01590, Ag10G02839, Ag2G00481, Ag3G00081, Ag3G00082 ... Ag7G01526, AgUnG00445
Arecaceae	Cocos nucifera	1	COCNU_11G000950
Arecaceae	Phoenix dactylifera	3	gene-LOC103701115, gene-LOC103701173, gene-LOC103701175
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.1054.V1.1, AsparagusV1_07.2369.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G21469, Ftri10G23224, Ftri18G02530, Ftri18G33615 ... Ftri9G13859
Brassicaceae	Arabidopsis thaliana	8	AT1G09880.1, AT1G09890.1, AT1G09910.1, AT1G65210.1 ... AT2G22620.1, AT4G24430.1, AT4G37950.1, AT4G38030.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10000697m.g.v1.0, Thhalv10007038m.g.v1.0 ... Thhalv10007058m.g.v1.0, Thhalv10007093m.g.v1.0, Thhalv10024612m.g.v1.0, Thhalv10024647m.g.v1.0, Thhalv10027081m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g08510.v2.2, Sp1g08520.v2.2, Sp1g08540.v2.2 ... Sp4g01660.v2.2, Sp7g22390.v2.2, Sp7g35600.v2.2, Sp7g35670.v2.2
Brassicaceae	Brassica nigra	10	BniB02g019040.2N, BniB03g003610.2N, BniB03g014580.2N ... BniB03g014620.2N, BniB04g029770.2N, BniB04g029790.2N, BniB05g001110.2N, BniB05g007660.2N, BniB05g012780.2N, BniB06g054280.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq02G1302, Ceq03G1045, Ceq03G1046, Ceq03G1047, Ceq03G1048 ... Ceq06G0354, Ceq06G0355
Casuarinaceae	Casuarina glauca	6	Cgl02G1345, Cgl03G1128, Cgl03G1129, Cgl03G1131, Cgl06G0374 ... Cgl06G0375
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g15030, gene.Cymno11g03560
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g05370, gene.Thate06g01560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-10105, nbisL1-mrna-10126, nbisL1-mrna-2138 ... nbisL1-mrna-7166, nbisL1-mrna-8801
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.2667, evm.TU.LG05.1105, evm.TU.LG06.246 ... evm.TU.LG06.248, evm.TU.LG06.249
Plantaginaceae	Plantago ovata	13	Pov_00001949, Pov_00002385, Pov_00002388, Pov_00016025 ... Pov_00016582, Pov_00020575, Pov_00021112, Pov_00026354, Pov_00026356, Pov_00037167, Pov_00037169, Pov_00037802, Pov_00041447
Plumbaginaceae	Limonium bicolor	9	Lb1G06861, Lb1G08036, Lb4G22819, Lb4G22905, Lb4G22906 ... Lb4G23016, Lb4G25132, Lb5G27844, Lb7G34541
Poaceae	Echinochloa crus-galli	15	AH04.1361, AH04.158, AH04.159, AH08.2343, BH04.1364 ... BH05.123, BH05.1236, BH08.2488, CH01.2733, CH04.1542, CH04.197, CH04.198, CH05.1469, CH05.190, CH08.2680
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_5AG0380240, gene-QOZ80_5AG0380250 ... gene-QOZ80_5BG0427320, gene-QOZ80_5BG0427330, gene-QOZ80_7AG0553780, gene-QOZ80_7BG0584830, gene-QOZ80_8AG0639980, gene-QOZ80_8BG0668600, gene-QOZ80_9AG0673560, gene-QOZ80_9BG0697260, gene-QOZ80_9BG0708030
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.4HG0356390.1, HORVU.MOREX.r3.6HG0547930.1 ... HORVU.MOREX.r3.6HG0556810.1, HORVU.MOREX.r3.7HG0688310.1
Poaceae	Lolium multiflorum	5	gene-QYE76_030646, gene-QYE76_044923, gene-QYE76_045004 ... gene-QYE76_065177, gene-QYE76_065184
Poaceae	Oryza coarctata	4	Oco15G014350, Oco16G013620, Oco22G001220, Oco24G000580
Poaceae	Oryza sativa	2	LOC_Os08g44020.2, LOC_Os08g44040.1
Poaceae	Paspalum vaginatum	5	gene-BS78_05G031500, gene-BS78_05G148700 ... gene-BS78_07G223400, gene-BS78_08G008400, gene-BS78_08G008900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0403407, Pt_Chr0703505
Poaceae	Sporobolus alterniflorus	12	Chr04G021600, Chr06G023200, Chr10G014090, Chr11G008180 ... Chr16G006560, Chr16G006600, Chr16G018900, Chr17G006050, Chr17G017900, Chr20G003040, Chr24G002160, Chr29G000590
Poaceae	Thinopyrum elongatum	5	Tel4E01G204000, Tel6E01G147800, Tel6E01G240200 ... Tel6E01G240500, Tel7E01G478600
Poaceae	Triticum dicoccoides	10	gene_TRIDC4AG029910, gene_TRIDC4BG020650 ... gene_TRIDC6AG007330, gene_TRIDC6AG014080, gene_TRIDC6AG014120, gene_TRIDC6BG010550, gene_TRIDC6BG019570, gene_TRIDC6BG019600, gene_TRIDC7AG036200, gene_TRIDC7BG027440
Poaceae	Triticum aestivum	15	TraesCS4A02G187200.1, TraesCS4B02G130900.1 ... TraesCS4D02G126300.1, TraesCS6A02G055300.2, TraesCS6A02G108200.1, TraesCS6A02G108400.1, TraesCS6B02G078500.1, TraesCS6B02G136800.1, TraesCS6B02G136900.1, TraesCS6D02G096200.1, TraesCS6D02G096400.1, TraesCS7A02G276300.1, TraesCS7B02G174100.1, TraesCS7D02G276200.1, TraesCSU02G121100.1
Poaceae	Zea mays	5	Zm00001eb039820_P001, Zm00001eb170140_P001 ... Zm00001eb196040_P001, Zm00001eb235440_P006, Zm00001eb332110_P001
Poaceae	Zoysia japonica	8	nbis-gene-40117, nbis-gene-42846, nbis-gene-49565 ... nbis-gene-50257, nbis-gene-50417, nbis-gene-52924, nbis-gene-52925, nbis-gene-55287
Poaceae	Zoysia macrostachya	4	Zma_g18868, Zma_g23418, Zma_g30009, Zma_g5911
Portulacaceae	Portulaca oleracea	20	evm.TU.LG01.191, evm.TU.LG01.719, evm.TU.LG01.722 ... evm.TU.LG02.2019, evm.TU.LG02.2344, evm.TU.LG04.1621, evm.TU.LG04.55, evm.TU.LG04.561, evm.TU.LG04.57, evm.TU.LG07.57, evm.TU.LG07.980, evm.TU.LG07.982, evm.TU.LG10.1277, evm.TU.LG15.904, evm.TU.LG15.907, evm.TU.LG19.320, evm.TU.LG19.327, evm.TU.LG23.271, evm.TU.LG23.579, evm.TU.LG24.230
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g28070, gene.Posoc03g29170, gene.Posoc04g06850
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.29719.1, evm.TU.Scaffold_3_RagTag.1137 ... evm.TU.Scaffold_3_RagTag.1143, evm.TU.Scaffold_6_RagTag.1721, evm.TU.Scaffold_7_RagTag.895, evm.TU.Scaffold_7_RagTag.896
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-17433, nbisL1-mrna-17452, nbisL1-mrna-19362 ... nbisL1-mrna-833, nbisL1-mrna-838, nbisL1-mrna-9397
Rhizophoraceae	Ceriops tagal	12	nbisL1-mrna-11963, nbisL1-mrna-11964, nbisL1-mrna-12227 ... nbisL1-mrna-15048, nbisL1-mrna-17071, nbisL1-mrna-17944, nbisL1-mrna-18200, nbisL1-mrna-20205, nbisL1-mrna-428, nbisL1-mrna-5439, nbisL1-mrna-5780, nbisL1-mrna-5848
Rhizophoraceae	Ceriops zippeliana	12	nbisL1-mrna-12043, nbisL1-mrna-12044, nbisL1-mrna-12045 ... nbisL1-mrna-20571, nbisL1-mrna-20776, nbisL1-mrna-2389, nbisL1-mrna-2390, nbisL1-mrna-2391, nbisL1-mrna-2392, nbisL1-mrna-2395, nbisL1-mrna-6726, nbisL1-mrna-6728
Rhizophoraceae	Kandelia candel	9	evm.TU.utg000002l.689, evm.TU.utg000002l.690 ... evm.TU.utg000002l.691, evm.TU.utg000011l.1046, evm.TU.utg000011l.1047, evm.TU.utg000015l.34, evm.TU.utg000018l.233, evm.TU.utg000019l.558, evm.TU.utg000019l.559
Rhizophoraceae	Kandelia obovata	6	Maker00001868, Maker00001872, Maker00003269, Maker00008325 ... Maker00010325, Maker00010846
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-11489, nbisL1-mrna-11490, nbisL1-mrna-13071 ... nbisL1-mrna-13072, nbisL1-mrna-13073, nbisL1-mrna-15403, nbisL1-mrna-15404, nbisL1-mrna-6160
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10142, nbisL1-mrna-10144, nbisL1-mrna-10145 ... nbisL1-mrna-17061, nbisL1-mrna-17062, nbisL1-mrna-1838, nbisL1-mrna-3365
Salicaceae	Populus euphratica	7	populus_peu12011, populus_peu12554, populus_peu14505 ... populus_peu32138, populus_peu32139, populus_peu32140, populus_peu32141
Solanaceae	Lycium barbarum	14	gene-LOC132604024, gene-LOC132614352, gene-LOC132614671 ... gene-LOC132614897, gene-LOC132615317, gene-LOC132615346, gene-LOC132615358, gene-LOC132615495, gene-LOC132616100, gene-LOC132627654, gene-LOC132627656, gene-LOC132627657, gene-LOC132627658, gene-LOC132640553
Solanaceae	Solanum chilense	8	SOLCI000708300, SOLCI000708400, SOLCI002702300 ... SOLCI003168000, SOLCI005936700, SOLCI005936800, SOLCI006277700, SOLCI006288700
Solanaceae	Solanum pennellii	15	gene-LOC107003447, gene-LOC107003577, gene-LOC107003578 ... gene-LOC107003579, gene-LOC107004102, gene-LOC107006009, gene-LOC107015977, gene-LOC107015978, gene-LOC107016105, gene-LOC107016450, gene-LOC107017775, gene-LOC107017776, gene-LOC107019910, gene-LOC107029989, gene-LOC114073921
Tamaricaceae	Reaumuria soongarica	5	STRG.15505_chr06_+, gene_15329, gene_15869, gene_9279 ... gene_9667
Tamaricaceae	Tamarix chinensis	6	TC01G2007, TC01G2010, TC02G0111, TC02G0736, TC04G1989 ... TC05G0211