Basic Information
Locus ID:
Chr28G013690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 35740829 | 35745826 | + | Chr28G013690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01490 | Ube1_repeat2 | 456 | 995 | 0.0 | - |
| CDD | cd01491 | Ube1_repeat1 | 39 | 424 | 5.8871E-149 | - |
| Pfam | PF00899 | ThiF family | 41 | 416 | 7.2E-28 | IPR000594 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 624 | 877 | 2.1E-82 | IPR019572 |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 214 | 284 | 8.1E-26 | IPR032418 |
| Pfam | PF09358 | Ubiquitin fold domain | 948 | 1037 | 2.1E-21 | IPR018965 |
| Pfam | PF00899 | ThiF family | 437 | 937 | 5.8E-73 | IPR000594 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 286 | 355 | 1.0E-21 | IPR032420 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 432 | 932 | 5.1E-127 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 34 | 422 | 1.57E-96 | IPR035985 |
| Gene3D | G3DSA:3.40.50.12550 | - | 159 | 447 | 5.8E-111 | - |
| Gene3D | G3DSA:2.40.30.180 | - | 202 | 283 | 5.8E-111 | IPR042302 |
| Gene3D | G3DSA:3.40.50.720 | - | 457 | 936 | 3.9E-191 | - |
| Gene3D | G3DSA:3.50.50.80 | - | 32 | 148 | 2.2E-34 | IPR042449 |
| Gene3D | G3DSA:1.10.10.2660 | - | 609 | 884 | 3.9E-191 | IPR042063 |
| Gene3D | G3DSA:3.10.290.60 | - | 950 | 1040 | 1.7E-19 | IPR038252 |
| SMART | SM00985 | UBA_e1_C_a_2 | 915 | 1037 | 1.4E-45 | IPR018965 |
| TIGRFAM | TIGR01408 | Ube1: ubiquitin-activating enzyme E1 | 34 | 1041 | 0.0 | IPR018075 |
| ProSitePatterns | PS00536 | Ubiquitin-activating enzyme signature 1. | 399 | 407 | - | IPR018074 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 616 | 624 | - | IPR033127 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 531 | 556 | 1.9E-63 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 176 | 203 | 1.9E-63 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 484 | 507 | 1.9E-63 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 61 | 85 | 1.9E-63 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 685 | 712 | 1.9E-63 | IPR000011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| Coils | Coil | Coil | 992 | 1012 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06460.1 | ubiquitin activating enzyme 2. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. | 0 |
| RefSeq | XP_025802919.1 | ubiquitin-activating enzyme E1 3 isoform X1 [Panicum hallii] | 0 |
| P31252 | Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum OX=4565 GN=UBA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SER0 | E1 ubiquitin-activating enzyme (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_56928 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology