Basic Information
Locus ID:
Chr28G012190
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 34054308 | 34058827 | - | Chr28G012190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 315 | 330 | 1.9 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 432 | 448 | 0.11 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 516 | 528 | 1.4 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 779 | 1028 | 3.0E-25 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 18 | 68 | 1.5E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 221 | 554 | 9.35E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 778 | 1051 | 1.94E-45 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 59 | 288 | 8.28E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 19 | 186 | 6.1E-36 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 854 | 1056 | 1.3E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 217 | 578 | 6.2E-81 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 760 | 852 | 1.4E-9 | - |
| SMART | SM00369 | LRR_typ_2 | 513 | 536 | 2.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 166 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 118 | 74.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 384 | 407 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 312 | 339 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 140.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 515 | 536 | 7.065096 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 775 | 1056 | 25.333088 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 513 | 526 | 6.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 248 | 261 | 6.4E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10020.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_039833657.1 | probable inactive receptor kinase At5g10020 [Panicum virgatum] | 0 |
| Q0WR59 | Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana OX=3702 GN=At5g10020 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9STY9 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_52058 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39469 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13329 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026796 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41876, Sbi_jg48251 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27592 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017497 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33307, Sgl38515, Sgl38535, Sgl38552 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003556, gene:ENSEOMG00000003920 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019560, CQ.Regalona.r1.6BG0020640 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30173430, pistato.v30198920 |
| Apiaceae | Apium graveolens | 2 | Ag3G01270, Ag7G02300 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G006320 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700901, gene-LOC103721205, gene-LOC103722440 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1730.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G16381 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012534m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g33380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g051870.2N, BniB08g004360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1798 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1865 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g09940, gene.Cymno11g06410 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g11980, gene.Thate04g06860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.732 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014473 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3773, BH03.4057, CH03.4328 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578170, gene-QOZ80_7BG0609460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0123080.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039582 |
| Poaceae | Oryza coarctata | 2 | Oco13G013230, Oco14G014000 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G358300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306390 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G001830, Chr24G014710, Chr27G015430, Chr28G012190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G317500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG020080, gene_TRIDC2BG024120 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G159900.2, TraesCS2B02G185800.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109780_P002, Zm00001eb327990_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-315, nbis-gene-33015 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5600, Zma_g6899 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.284, evm.TU.LG15.668 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g23730, gene.Posoc04g14500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1632 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16555 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12142 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.987 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007483 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15098 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4445 |
| Salicaceae | Populus euphratica | 2 | populus_peu13844, populus_peu23001 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616161 |
| Solanaceae | Solanum chilense | 1 | SOLCI005390200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018150 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2381 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0997, TC11G0236 |
| Zosteraceae | Zostera marina | 2 | Zosma03g30800.v3.1, Zosma06g04140.v3.1 |