Basic Information
Locus ID:
Chr28G009890
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Sugar (and other) transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 30349329 | 30373419 | - | Chr28G009890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 29 | 435 | 7.1E-30 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 21 | 475 | 1.02E-55 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 24 | 477 | 2.0E-70 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 23 | 472 | 30.433708 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 351 | 366 | - | IPR005829 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 77 | 92 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_034582589.1 | organic cation/carnitine transporter 7-like [Setaria viridis] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6VZE3 | MFS domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G371700v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology