Basic Information
Locus ID:
Chr28G007420
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
CCT3
Description:
assists the folding of proteins upon ATP hydrolysis
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 23202799 | 23224168 | + | Chr28G007420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 199 | 452 | 8.4E-66 | IPR002423 |
| Pfam | PF00069 | Protein kinase domain | 466 | 584 | 1.4E-20 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 465 | 616 | 7.62E-35 | IPR011009 |
| SUPERFAMILY | SSF54849 | GroEL-intermediate domain like | 172 | 343 | 6.71E-14 | IPR027410 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 198 | 317 | 1.73E-24 | IPR027409 |
| SUPERFAMILY | SSF48592 | GroEL equatorial domain-like | 344 | 453 | 6.93E-28 | IPR027413 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 542 | 584 | 9.4E-28 | - |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 198 | 308 | 7.1E-72 | IPR027409 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 463 | 541 | 9.4E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 585 | 612 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.260.10 | - | 309 | 344 | 7.1E-72 | IPR027410 |
| Gene3D | G3DSA:1.10.560.10 | - | 345 | 451 | 7.1E-72 | IPR027413 |
| SMART | SM00220 | serkin_6 | 459 | 644 | 8.0E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 459 | 647 | 15.990515 | IPR000719 |
| Coils | Coil | Coil | 323 | 343 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26360.1 | TCP-1/cpn60 chaperonin family protein. | 0 |
| RefSeq | XP_025812332.1 | T-complex protein 1 subunit gamma [Panicum hallii] | 0 |
| Q84WV1 | T-complex protein 1 subunit gamma OS=Arabidopsis thaliana OX=3702 GN=CCT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D6QQ15 | T-complex protein 1 subunit gamma OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d053553 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr28G007420.