Basic Information
Locus ID:
Chr28G005580
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 13742243 | 13754937 | + | Chr28G005580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 364 | 1.79791E-28 | - |
| Pfam | PF00168 | C2 domain | 262 | 357 | 6.8E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 1.6E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 1.71E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 257 | 416 | 1.2E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 361 | 7.4E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 245 | 364 | 20.818583 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.367887 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 304 | 317 | 2.3E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 326 | 334 | 2.3E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 279 | 291 | 2.3E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 508 | - | - |
| Coils | Coil | Coil | 397 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_004956021.1 | synaptotagmin-5 [Setaria italica] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | K3ZSH6 | Synaptotagmin-5 OS=Setaria italica OX=4555 GN=101781661 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology