Basic Information
Locus ID:
Chr28G005510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 13276358 | 13283376 | - | Chr28G005510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 398 | 3.4E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 430 | 7.5E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 399 | 1.53E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 401 | 433 | 4.0E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 400 | 2.7E-16 | - |
| SMART | SM00547 | zf_4 | 372 | 396 | 6.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 405 | 429 | 4.8E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 10.014692 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 403 | 432 | 9.427498 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 407 | 426 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 728 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 701 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_039792241.1 | uncharacterized protein LOC120658099 [Panicum virgatum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9VV15 | Zinc finger protein VAR3, chloroplastic (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_12844 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology