HalophFGD

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Basic Information
Locus ID: Chr28G003740
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description:
Maps and Mapping Data
Chromosome/Scaffold Start End Strand ID
GWHCBIM00000028 5927599 5928834 + Chr28G003740
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF52047 RNI-like 163 228 6.02E-5 -
MobiDBLite mobidb-lite consensus disorder prediction 82 99 - -
MobiDBLite mobidb-lite consensus disorder prediction 68 99 - -
Best hit
Source Best Hit ID Description E-value
RefSeq XP_002461735.2 uncharacterized protein LOC8081787 [Sorghum bicolor] 0
TrEMBL A0A5J9VUP7 F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_13373 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 13 AH03.2687, AH03.692, AH03.694, BH03.2828, BH03.454, BH03.819 ...
BH03.824, BH03.833, CH03.3031, CH03.913, CH03.918, CH03.922, CH03.936
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0011080, gene-QOZ80_7AG0561550 ...
gene-QOZ80_7BG0594810, gene-QOZ80_7BG0595060
Poaceae Lolium multiflorum 2 gene-QYE76_018786, gene-QYE76_025567
Poaceae Oryza coarctata 4 Oco14G004560, Oco14G004620, Oco14G005020, Oco14G005130
Poaceae Oryza sativa 1 LOC_Os07g13930.1
Poaceae Paspalum vaginatum 2 gene-BS78_02G109200, gene-BS78_02G109400
Poaceae Sporobolus alterniflorus 2 Chr19G015760, Chr28G003740
Poaceae Zoysia japonica 2 nbis-gene-49405, nbis-gene-49406
Poaceae Zoysia macrostachya 4 Zma_g4955, Zma_g4956, Zma_g4957, Zma_g4958
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.