Basic Information
Locus ID:
Chr28G003360
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein tyrosine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 5204271 | 5206229 | - | Chr28G003360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 247 | 420 | 1.6E-32 | IPR000719 |
| Pfam | PF19160 | SPARK | 24 | 124 | 2.3E-11 | IPR043891 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 248 | 423 | 3.96E-50 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 239 | 464 | 3.9E-51 | - |
| SMART | SM00220 | serkin_6 | 241 | 505 | 1.4E-14 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 224 | 556 | 26.774755 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 340 | 352 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 472 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29990.1 | Leucine-rich repeat transmembrane protein kinase protein. | 0 |
| RefSeq | XP_025801351.1 | proline-rich receptor-like protein kinase PERK3 [Panicum hallii] | 0 |
| Q8H1E3 | Probable serine/threonine-protein kinase PBL17 OS=Arabidopsis thaliana OX=3702 GN=PBL17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7EMR3 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G082300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold024094G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717896 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g29490 |
| Poaceae | Oryza coarctata | 1 | Oco14G004500 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g12480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G104200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G003910, Chr28G003360 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49353 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4928 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27770 |