Basic Information
Locus ID:
Chr28G002190
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 2924865 | 2931922 | + | Chr28G002190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 20 | 158 | 8.8172E-56 | - |
| Pfam | PF00628 | PHD-finger | 142 | 190 | 4.1E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 23 | 137 | 2.0E-22 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 194 | 6.2E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 206 | 6.7E-21 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 134 | 2.2E-30 | IPR043151 |
| SMART | SM00439 | BAH_4 | 21 | 138 | 6.0E-39 | IPR001025 |
| SMART | SM00249 | PHD_3 | 142 | 189 | 7.1E-8 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 140 | 191 | 9.231899 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 138 | 22.955072 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 143 | 188 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 222 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_004955695.1 | chromatin remodeling protein EBS [Setaria italica] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A835DSM7 | PHD-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_016030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology