Basic Information
Locus ID:
Chr28G002050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 2768694 | 2772280 | - | Chr28G002050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16525 | RING-HC_PCGF | 56 | 99 | 4.88569E-16 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 58 | 98 | 6.2E-6 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 118 | 4.42E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 140 | 6.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 58 | 98 | 0.0025 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 58 | 99 | 10.763177 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 74 | 83 | - | IPR017907 |
| Coils | Coil | Coil | 411 | 438 | - | - |
| Coils | Coil | Coil | 444 | 474 | - | - |
| Coils | Coil | Coil | 355 | 375 | - | - |
| Coils | Coil | Coil | 380 | 400 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 0 |
| RefSeq | XP_022679800.1 | plectin-like isoform X3 [Setaria italica] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6TDQ5 | Median body protein-like OS=Panicum miliaceum OX=4540 GN=C2845_PM03G21680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.413, BH03.502, CH03.588 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G056800 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr28G002050 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4822 |