Basic Information
Locus ID:
Chr28G001310
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 1836089 | 1848494 | - | Chr28G001310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 206 | 534 | 2.5309E-167 | - |
| CDD | cd00121 | MATH | 65 | 188 | 7.89711E-37 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 633 | 885 | 3.5E-75 | IPR024729 |
| Pfam | PF00917 | MATH domain | 71 | 190 | 3.7E-17 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 208 | 529 | 3.7E-47 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 895 | 1104 | 4.7E-56 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 65 | 198 | 5.07E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 203 | 560 | 1.14E-97 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 205 | 533 | 3.9E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 811 | 908 | 2.8E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 693 | 809 | 6.9E-43 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 63 | 204 | 6.8E-50 | IPR008974 |
| SMART | SM00061 | math_3 | 65 | 169 | 1.1E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 208 | 532 | 40.832844 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 63 | 188 | 35.860489 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 448 | 465 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 209 | 224 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| Coils | Coil | Coil | 545 | 572 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_025800316.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Panicum hallii] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9W0S6 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15031 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology