Basic Information
Locus ID:
Chr28G001160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 1689619 | 1691597 | + | Chr28G001160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 100 | 133 | 2.8E-6 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 29 | 135 | 5.07E-10 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 90 | 142 | 7.4E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_015615617.1 | calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | C7J888 | Os11g0667400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0667400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001853 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0859s00007.v1.0 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g44540.1 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001240, Chr28G001160 |