Basic Information
Locus ID:
Chr28G000690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 1083463 | 1085130 | - | Chr28G000690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 7 | 116 | 1.41407E-6 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 161 | 281 | 3.2E-19 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 147 | 282 | 4.91E-24 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 3 | 120 | 1.44E-13 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 5 | 119 | 3.7E-8 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 284 | 358 | 1.0E-10 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 148 | 282 | 1.8E-29 | IPR011333 |
| SMART | SM00225 | BTB_4 | 169 | 283 | 2.9E-18 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 169 | 241 | 17.148424 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_025800261.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum hallii] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368PV70 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G027300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_7AG0554940, gene-QOZ80_7AG0554950 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G002020 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g18830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G028500 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001810, Chr28G000690 |